PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021388-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 953aa    MW: 106400 Da    PI: 4.8433
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021388-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.4e-10547348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  WALNUT_00021388-RA  5 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 47
                        7*****************99.********8..**********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.13151IPR017930Myb domain
SMARTSM007175.2E-11249IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-11452IPR009057Homeodomain-like
CDDcd116591.78E-27450No hitNo description
Gene3DG3DSA:1.10.10.601.7E-10548IPR009057Homeodomain-like
PfamPF139211.4E-9662No hitNo description
PfamPF118311.2E-57351600IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 953 aa     Download sequence    Send to blast
MYETEWTREE DEKLLHLAKL MPTQWRTIAP IVGRTPSQCL ERYEKLLDAA CAKDDNYEAS  60
EDPRKLRPGE IDPNPESKPA RPDPIDMDED EKEMLSEARA RLANTKGKKA KRKAREKQLE  120
EARRLASLQK RRELKAAGID TRQRKRKRKG IDYNSEIPFE KKPPPGFYDV ADEDRPVEQA  180
QFPTTIEELE GKRRMDMETQ LRKQDIAKNK IAQRQDAPSA ILQANKLNDP ETVRKRSKLM  240
LPAPQISDHE LEEIAKMGYA SDILVGSEEL SEGSGATRAL LANYSQTPQP GMTPLRTPQR  300
TPAGKGDAIM MEAENLARLR ESQTPLLGGQ NPELHPSDFS GVTPKKREIQ TPNPLLTPSA  360
TPGGVSLTPR IGMTPSRDGY FNMTPKGTPV RDELHINEDM DVQDSAKLDQ RRQADLRRNL  420
RSGLINLPQP KNEYQIVMQP VLEDNEEPEV KIEEDMSDRI AREKAVEEAR QQALLRKRSK  480
VLQRELPRPP AASLDLIRNS LIRADEDKSS FVPPTSIEQA DEMIRKELLS LLEHDSAKYP  540
LEKKLTKEKK KSVKHSANGP GYVPEIDGFE EDELKEADTL IGEEARYLRL AMGHENQSLD  600
EFVEAHSTCL NDLMYFPTRN AYGLSSVAGN MEKLAALQNE FENVKKKMDG DKAKAESLEN  660
KVKVLTHGYE TRAKTAHWPK IAATLKQMDT AATELECFRA LQKQEQLAAS HRINSLWEEV  720
QRQKELERTL QMRYGDLVAE LDRTQYLMEK YRVQAEEQEA IAAKNHTLEL AKAAEDQTLA  780
QSIVTDTPIL STDPIDGNAV QQMDAKQELA YASPKSDMDV DAQNEHPQLC VVENFPTSSP  840
TAVEQEATTP VQGNTFEGTD IQLSLPGRDN PKAVPGMVTA IDSGDGAAGA NITTEVTKEN  900
PYSGDPQNVA EAVSLDGGLS KQEDCVPETA GNDSCDGGDA MQVSAGDGGH TDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jb9_W5e-63316858236Pre-mRNA-splicing factor cdc5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129148KRRELKAAGIDTRQRKRKRK
2143148RKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521973.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLB9S7K40.0B9S7K4_RICCO; Cell division control protein, putative
STRINGPOPTR_0019s03520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5